Metagenome-assembled genome: SRR789046_bin.21_meta... - BioSample

Metagenome-assembled genome: SRR789046_bin.21_metaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA12233744; SRA: ERS9830672

Organism: Barnesiella viscericola
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella

Attributes

collection date	2010-09-07
broad-scale environmental context	Chicken digestive system
local-scale environmental context	Digestive tube
environmental medium	Cecum
geographic location	United Kingdom
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	Chickens are major source of food and protein worldwide. Feed conversion and the health of chickens relies on the largely unexplored complex microbial community that inhabits the chicken gut, particularly the ceca. Therefore a studly goal was to use in-depth metagenomics of the ceca to examine the microbial community from the ceca of a Broiler Chicken.
sample name	SRR789046_bin.21_metaWRAP_v1.1_MAG
ENA first public	2022-01-10
ENA last update	2022-01-10
ENA-CHECKLIST	ERC000047
External Id	SAMEA12233744
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-01-10T20:27:40Z
INSDC last update	2022-01-10T20:27:40Z
INSDC status	public
Submitter Id	SRR789046_bin.21_metaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.24
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	50.9047
geographic location (longitude)	-3.5233
metagenomic source	chicken gut metagenome
sample derived from	SAMN01983846
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR789046 of study SRP019776.

BioProject: PRJEB41355
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Submission: EBI; 2022-01-11

Accession:: SAMEA12233744
ID:: 24830448

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Metagenome-assembled genome: SRR789046_bin.21_metaWRAP_v1.1_MAG

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