Metagenome-assembled genome: ERR2206751_bin.112_CO... - BioSample

Metagenome-assembled genome: ERR2206751_bin.112_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14074696; SRA: ERS11677926

Organism: uncultured Rhodobacter sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Rhodobacter group; Rhodobacter; environmental samples

Attributes

collection date	2014-06-05
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Baltic Sea
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Two out of three datasets (the first one already published with Hugerth et al 2015) included in the Baltic Sea reference metagenome assembly. The assembly include herein is a coassembly of all three datasets, complete with annotated genes to facilitate further studies of the Baltic Sea with much less computational effort. The assembly is constructed using 2.6 billion metagenomic reads from 81 water samples, spanning both spatial and temporal dimensions, and contains 6.8 million genes that have been annotated for function and taxonomy. The assembly is useful as a reference, facilitating taxonomic and functional annotation of additional samples by simply mapping their reads against the assembly.
sample name	ERR2206751_bin.112_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14074696
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:39Z
INSDC last update	2023-01-03T00:32:39Z
INSDC status	public
Submitter Id	ERR2206751_bin.112_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Megahit
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.5
completeness software	CheckM
contamination score	5.68
geographic location (latitude)	58.1323
geographic location (longitude)	10.0
metagenomic source	marine metagenome
sample derived from	SAMEA104408592
scientific_name	uncultured Rhodobacter sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2206751 of study ERP104730.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission: EBI; 2023-01-04

Accession:: SAMEA14074696
ID:: 32556612

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Metagenome-assembled genome: ERR2206751_bin.112_CONCOCT_v1.1_MAG

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