ERS14236933

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Result Filters

Organism: Flavipsychrobacter stenotrophus
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Flavipsychrobacter

Attributes

broad-scale environmental context	freshwater ecosystem
collection date	2019-05-24
environmental medium	mesocosm
geographic location	Czech Republic
isolation source	mesocosm experiment
project name	PRJEB56877
sample name	JR-MC-F-240519-37
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-30
ENA-LAST-UPDATE	2022-11-30
External Id	SAMEA112147781
INSDC center alias	Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center name	biology centre of the czech academy of sciences, institute of hydrobiology
INSDC first public	2022-11-30T00:19:02Z
INSDC last update	2022-11-30T00:19:02Z
INSDC status	public
Submitter Id	JR-MC-F-240519-37
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	70.8
completeness software	CheckM
contamination score	1.38
geographic location (latitude)	48.6189
geographic location (longitude)	14.6731
local environmental context	mesocosm
metagenomic source	aquatic metagenome
sample derived from	ERS14236933
taxonomic identity marker	multi-marker approach