ERS14236936

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Comamonadaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; unclassified Comamonadaceae

Attributes

broad-scale environmental context	freshwater ecosystem
collection date	2019-05-24
environmental medium	mesocosm
geographic location	Czech Republic
isolation source	mesocosm experiment
project name	PRJEB56877
sample name	JR-MC-I-240519-110
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-30
ENA-LAST-UPDATE	2022-11-30
External Id	SAMEA112148027
INSDC center alias	Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center name	biology centre of the czech academy of sciences, institute of hydrobiology
INSDC first public	2022-11-30T00:19:02Z
INSDC last update	2022-11-30T00:19:02Z
INSDC status	public
Submitter Id	JR-MC-I-240519-110
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	87.44
completeness software	CheckM
contamination score	3.64
geographic location (latitude)	48.6189
geographic location (longitude)	14.6731
local environmental context	mesocosm
metagenomic source	aquatic metagenome
sample derived from	ERS14236936
taxonomic identity marker	multi-marker approach