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ERS14236934

Identifiers
BioSample: SAMEA112147909; SRA: ERS14257817
Organism
Betaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; unclassified Betaproteobacteria
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2019-05-24
environmental mediummesocosm
geographic locationCzech Republic
isolation sourcemesocosm experiment
project namePRJEB56877
sample nameJR-MC-G-240519-63
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112147909
INSDC center aliasBiology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center namebiology centre of the czech academy of sciences, institute of hydrobiology
INSDC first public2022-11-30T00:19:02Z
INSDC last update2022-11-30T00:19:02Z
INSDC statuspublic
Submitter IdJR-MC-G-240519-63
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score50.8
completeness softwareCheckM
contamination score2.41
geographic location (latitude)48.6189
geographic location (longitude)14.6731
local environmental contextmesocosm
metagenomic sourceaquatic metagenome
sample derived fromERS14236934
taxonomic identity markermulti-marker approach
Description

JR-MC-G-240519-63: Bacteria; Proteobacteria; Betaproteobacteria

BioProject
PRJEB56877 Mesocosm experiment
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112147909
ID:
31960096

BioProject Nucleotide

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