U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

ERS14236930

Identifiers
BioSample: SAMEA112147566; SRA: ERS14257474
Organism
Opitutia bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Opitutia; unclassified Opitutia
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2019-05-24
environmental mediummesocosm
geographic locationCzech Republic
isolation sourcemesocosm experiment
project namePRJEB56877
sample nameJR-MC-C-240519-49
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112147566
INSDC center aliasBiology Centre of the Czech Academy of Sciences, Institute of Hydrobiology
INSDC center namebiology centre of the czech academy of sciences, institute of hydrobiology
INSDC first public2022-11-30T00:19:03Z
INSDC last update2022-11-30T00:19:03Z
INSDC statuspublic
Submitter IdJR-MC-C-240519-49
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score68.74
completeness softwareCheckM
contamination score1.35
geographic location (latitude)48.6189
geographic location (longitude)14.6731
local environmental contextmesocosm
metagenomic sourceaquatic metagenome
sample derived fromERS14236930
taxonomic identity markermulti-marker approach
Description

JR-MC-C-240519-49: Bacteria; Verrucomicrobia; Opitutae

BioProject
PRJEB56877 Mesocosm experiment
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112147566
ID:
31959713

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center