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08042020_METABAT_45

Identifiers
BioSample: SAMEA110055894; SRA: ERS12157994
Organism
Candidatus Poseidonia alphae
cellular organisms; Archaea; Methanobacteriati; Thermoplasmatota; Candidatus Poseidoniia; Candidatus Poseidoniales; Candidatus Poseidoniaceae; Candidatus Poseidonia
Attributes
collection date2020-04-08
broad-scale environmental contextmarine biome [ENVO:00000447]
local-scale environmental contextmicrobial feature [ENVO:00002150]
environmental mediumcoastal sea water [ENVO:00002150]
geographic locationNorth Sea
investigation typemetagenome-assembled genome
isolation sourcemarine water
project name2020 Helgoland Spring Bloom Metagenomes
sample nameAG_MB45
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-09-23
ENA-LAST-UPDATE2022-09-23
External IdSAMEA110055894
INSDC center aliasMax Planck Institute for Marine Microbiology
INSDC center nameMax Planck Institute for Marine Microbiology
INSDC first public2022-09-23T08:24:24Z
INSDC last update2022-09-23T08:24:24Z
INSDC statuspublic
Submitter IdAG_MB45
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareFlye v2.8.3
binning parametersanvi'o 7, default parameters
binning softwareMetabat2 and manual refinement with anvi’o v7
completeness score86.27
completeness softwareCheckM v1.0.18
contamination score0
geographic location (latitude)54.19
geographic location (longitude)7.9
metagenomic sourcemarine metagenome
sample derived fromERS12037245
sequencing methodPacific Biosciences Sequel II
taxonomic identity markermulti-marker approach (GTDB-tk v1.3.0, GTDB v202)
Description

seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 μm - and 3 μm - pore-size polycarbonate filters and finally filtered onto 0.2 μm pore-size polycarbonate filter, frozen at -80°C. This sample refers to the 0.2 - 3 μm fraction

BioProject
PRJEB52999 undefined
Retrieve all samples from this project

Submission
EBI; 2022-09-24
Accession:
SAMEA110055894
ID:
31004127

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