MIGS Cultured Bacterial/Archaeal sample from Staph... - BioSample

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Result Filters

Identifiers: BioSample: SAMN00001491; Sample name: BCM-HMP0023; SRA: SRS001956

Organism: Staphylococcus aureus subsp. aureus USA300_TCH959
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus USA300

Attributes

collection date	not determined
estimated size	2741000
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
source material identifiers	ATCC BAA-1718
investigation type	bacteria_archaea
host taxonomy ID	9606 (9606)
local-scale environmental context	human-associated habitat [ENVO:00009003]
project name	Staphylococcus aureus aureus USA300_TCH959
geographic location	not determined
reference for biomaterial	not determined
environmental medium	biological product [ENVO:02000043]
isolation and growth condition	not determined
environmental package	missing
isolation source	missing
strain	USA300_TCH959
number of replicons	not determined
sub species	aureus
finishing strategy (depth of coverage)	Level 2: High-Quality Draft64.23x;256
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_type	Reference Genome
misc_param: HMP body site	not determined
nucleic acid extraction	not determined
assembly	Newbler v. 2.0.0-Eclipse
misc_param: HMP supersite	skin
sequencing method	454, Sanger, Illumina