Alistipes putredinis DSM 17216

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Identifiers: BioSample: SAMN00000002; Sample name: 19655; SRA: SRS000002

Organism: Alistipes putredinis DSM 17216
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes putredinis

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

collection date	not determined
estimated size	2550000
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
local-scale environmental context	human-associated habitat [ENVO:00009003]
investigation type	missing
host taxonomy ID	9606 (9606)
project name	Alistipes putredinis DSM 17216
geographic location	not determined
source material identifiers	DSM 17216, CCUG 45780, CIP 104286, ATCC 29800, Carlier 10203, VPI 3293
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
isolation and growth condition	not determined
environmental package	missing
strain	DSM 17216
isolation source	missing
finishing strategy (depth of coverage)	Level 3: Improved-High-Quality Draft11.6x;20
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
project_type	Reference Genome
misc_param: HMP body site	not determined
nucleic acid extraction	not determined
assembly	PCAP
misc_param: HMP supersite	gastrointestinal_tract
sequencing method	454-GS20, Sanger
type-material	type strain of Bacteroides putredinis

Description

Alistipes putredinis (GenBank Accession Number for 16S rDNA gene: L16497) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. It has been found in 16S rDNA sequence-based enumerations of the colonic microbiota of adult humans (Eckburg et. al. (2005), Ley et. al. (2006)).

Keywords: GSC:MIxS;MIGS:6.0

Links: DNA Source

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