Metagenome-assembled genome: ERR3827238_bin.3_meta... - BioSample

Metagenome-assembled genome: ERR3827238_bin.3_metaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA12514480; SRA: ERS10121082

Organism: Granulicatella elegans
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella

Attributes

collection date	not provided
broad-scale environmental context	Human oral metagenome
local-scale environmental context	Human oral cavity
environmental medium	Human oral cavity
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human oral metagenome
project name	The microbiome of the oral cavity is the second largest and diverse microbiota after the gut, harboring over 700 species of bacteria and including also fungi, viruses and protozoa. A detailed site-specific map of oral microorganisms (including also eukaryotes and viruses) and their relative abundance is still missing. The data of this study provide for the first time a comprehensive view of the healthy oral microbiome and its resistome, contributing to a deeper understanding of the composition of oral microbiome in the healthy subject, and providing an important reference for future studies exploring functional and metabolic alterations associated with diseases, which might be useful in identifying microbial signatures for targeted therapies and precision medicine.
sample name	ERR3827238_bin.3_metaWRAP_v1.1_MAG
ENA first public	2022-01-21
ENA last update	2022-01-21
ENA-CHECKLIST	ERC000047
External Id	SAMEA12514480
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-01-21T20:47:30Z
INSDC last update	2022-01-21T20:47:30Z
INSDC status	public
Submitter Id	ERR3827238_bin.3_metaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit v1.2.9
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	63.55
completeness software	CheckM
contamination score	0.82
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human oral metagenome
sample derived from	SAMEA6489103
sequencing method	Ion Torrent S5
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3827238 of study ERP119456.

BioProject: PRJEB49987
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Submission: EBI; 2022-01-22

Accession:: SAMEA12514480
ID:: 25180124

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Metagenome-assembled genome: ERR3827238_bin.3_metaWRAP_v1.1_MAG

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