Pathogen: environmental/food/other sample from Esc... - BioSample

Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN11643621; Sample name: Escherichia coli strain MEZEC7; SRA: SRS4805559

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

strain	MEZEC7
collected by	Mohamed Ezzat El Zowalaty Laboratory (VMID)
collection date	2018-08-14
geographic location	South Africa: KwaZulu-Natal
host	sheep
isolation source	feces
latitude and longitude	missing

Description: Whole genome sequencing of cultured E. coli as part of Prof. Mohamed Ezzat El Zowalaty's One health Zoonosis surveillance project for the rapid detection of outbreaks of foodborne illnesses and antimicrobial resistance.

BioProject: PRJNA541983 Escherichia coli
Retrieve all samples from this project

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Testing standard
amikacin	resistant	==	13	mm	disk diffusion	CLSI
ampicillin	resistant	==	6	mm	disk diffusion	CLSI
ampicillin-sulbactam	susceptible	==	20	mm	disk diffusion	CLSI
azithromycin	resistant	==	12	mm	disk diffusion	CLSI
ceftazidime	susceptible	==	23	mm	disk diffusion	CLSI
cefepime	susceptible	==	25	mm	disk diffusion	CLSI
cefotaxime	susceptible	==	23	mm	disk diffusion	CLSI
ceftriaxone	susceptible	==	30	mm	disk diffusion	CLSI
cefalexin	intermediate	==	16	mm	disk diffusion	CLSI
chloramphenicol	resistant	==	6	mm	disk diffusion	CLSI
ciprofloxacin	resistant	==	22	mm	disk diffusion	CLSI
colistin	not defined	==	13	mm	disk diffusion	CLSI
doripenem	resistant	==	12	mm	disk diffusion	CLSI
doxycycline	resistant	==	6	mm	disk diffusion	CLSI
ertapenem	susceptible	==	29	mm	disk diffusion	CLSI
erythromycin	resistant	==	6	mm	disk diffusion	CLSI
gentamicin	susceptible	==	19	mm	disk diffusion	CLSI
imipenem	susceptible	==	25	mm	disk diffusion	CLSI
levofloxacin	susceptible	==	28	mm	disk diffusion	CLSI
meropenem	resistant	==	11	mm	disk diffusion	CLSI
minocycline	resistant	==	6	mm	disk diffusion	CLSI
neomycin	resistant	==	8	mm	disk diffusion	CLSI
norfloxacin	susceptible	==	30	mm	disk diffusion	CLSI
polymyxin B	not defined	==	15	mm	disk diffusion	CLSI
streptomycin	resistant	==	6	mm	disk diffusion	CLSI
tetracycline	resistant	==	6	mm	disk diffusion	CLSI
tobramycin	susceptible	==	16	mm	disk diffusion	CLSI
trimethoprim-sulfamethoxazole	resistant	==	6	mm	disk diffusion	CLSI