Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Acinetobacter baumannii

Organism: Acinetobacter baumannii
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex

Attributes

Interagency Food Safety Analytics Collaboration (IFSAC) category	clinical/research, human
source type	human
collected by	Aga Khan University, Karachi
collection date	2004
geographic location	Pakistan
isolate name alias	BU-8368
latitude and longitude	missing
strain	CFSAN059604
isolation source	urine
host disease	missing
host	Homo sapiens
project name	GenomeTrakr
sequenced by	FDA Center for Food Safety and Applied Nutrition
attribute_package	clinical/host-associated
ontological term	urine:UBERON_0001088
PublicAccession	CFSAN059604
ProjectAccession	PRJNA342326
Species	baumannii
Genus	Acinetobacter

BioProject: PRJNA342326 Citrobacter freundii, Shigella sp., Salmonella enterica, Enterobacter cloacae, Citrobacter sp., and Escherichia coli
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Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Testing standard
imipenem	resistant	==	4	mg/L	MIC	CLSI
ertapenem	resistant	>	8	mg/L	MIC	CLSI
doripenem	resistant	>	8	mg/L	MIC	CLSI
meropenem	resistant	==	4	mg/L	MIC	CLSI
cefepime	resistant	==	16	mg/L	MIC	CLSI
ciprofloxacin	resistant	>	8	mg/L	MIC	CLSI
ceftriaxone	resistant	>	32	mg/L	MIC	CLSI
aztreonam	resistant	==	32	mg/L	MIC	CLSI
trimethoprim-sulfamethoxazole	resistant	>	8/152	mg/L	MIC	CLSI
polymyxin B	susceptible	==	1	mg/L	MIC	CLSI
colistin	susceptible	==	1	mg/L	MIC	EUCAST
tetracycline	resistant	>	32	mg/L	MIC	CLSI
cefazolin	resistant	>	8	mg/L	MIC	CLSI
tigecycline	intermediate	==	2	mg/L	MIC	EUCAST
cefotaxime	resistant	>	64	mg/L	MIC	CLSI
ceftazidime	resistant	>	128	mg/L	MIC	CLSI
amikacin	susceptible	==	2	mg/L	MIC	CLSI
gentamicin	resistant	>	16	mg/L	MIC	CLSI
levofloxacin	resistant	==	8	mg/L	MIC	CLSI
tobramycin	susceptible	==	1	mg/L	MIC	CLSI
piperacillin-tazobactam	resistant	>	128/4	mg/L	MIC	CLSI
ampicillin	resistant	>	32	mg/L	MIC	CLSI
ampicillin-sulbactam	resistant	>	32/16	mg/L	MIC	CLSI
chloramphenicol	resistant	>	16	mg/L	MIC	CLSI
cefoxitin	resistant	>	16	mg/L	MIC	CLSI
minocycline	susceptible	<	4	mg/L	MIC	CLSI