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Uncultivated Alphaproteobacteria bacterium UBA6178 genome recovered from SRX327520

Identifiers
BioSample: SAMN06456553; Sample name: Alphaproteobacteria bacterium UBA6178; SRA: SRS2033259
Organism
Alphaproteobacteria bacterium UBA6178
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationCanada: Near Fort McMurray in northeastern Alberta
isolateUBA6178
isolation sourcewaste water
metagenome sourcehydrocarbon metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX327520 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated95.99%
contamination_estimated2.15%
environmental_sampletrue
genome_coverage18.23
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the hydrocarbon metagenome reads: SRR943325,SRR943327,SRR943323,SRR943326,SRR942940,SRR943328,SRR943324.
Description

Uncultivated genome recovered from an assembly of the SRX327520 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06456553
ID:
6456553

BioProject SRA Nucleotide

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