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Uncultivated Collinsella sp. UBA1690 genome recovered from SRX498680

Identifiers
BioSample: SAMN06453407; Sample name: Collinsella sp. UBA1690; SRA: SRS2033983
Organism
Collinsella sp. UBA1690
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; unclassified Collinsella
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationGermany: Zoo of Hamburg
isolateUBA1690
isolation sourceFeces of three-weeks old elephant
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX498680 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated99.19%
contamination_estimated1.61%
environmental_sampletrue
genome_coverage71.07
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1201870.
Description

Uncultivated genome recovered from an assembly of the SRX498680 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453407
ID:
6453407

BioProject SRA Nucleotide

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