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Animal sample from Thomomys bottae (Botta's pocket gopher) for VGP reference genome, mThoBot1

Identifiers
BioSample: SAMN37300244; Sample name: Animal sample from Thomomys bottae (Botta's pocket gopher) for VGP reference genome, mThoBot1; SRA: SRS22331154
Organism
Thomomys bottae (Botta's pocket gopher)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Geomyidae; Thomomys
Package
Model organism or animal; version 1.0
Attributes
isolatemThoBot1
development stageunkown
collection date1990-02-03
geographic locationUSA: San Bernardino County Specific Locality, Harvard, California
sexmale
tissueunknown
biomaterial providerChris Conroy: Museum of Vertebrate Zoology
collected byJames L. Patton
latitude and longitude34.9365976 N 116.66389 W
storage conditions-80oC
treatmentfrozen
specimen voucherMVZ:Mamm:179317
Loan number2019.8939
Description

Botta's pocket gopher (Thomomys bottae) is native to western North America. Botta's pocket gopher is highly adaptable, burrowing into a very diverse array of soils from loose sands to tightly packed clays, and from arid deserts to high altitude meadows. This sample is from a wild caught male in California, USA, collected by James L. Paton of the Museum of Vertebrate Zoology, and provided by Chris Conroy of the same museum, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL), coordinated by Olivier Fedrigo and Erich D. Jarvis.

BioProjects
PRJNA1147606
Retrieve all samples from this project

PRJNA1013538 Thomomys bottae isolate:mThoBot2
Retrieve all samples from this project

PRJNA1013537 Thomomys bottae isolate:mThoBot2
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2023-09-06
Accession:
SAMN37300244
ID:
37300244

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