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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers
BioSample: SAMN38228870; Sample name: BWH_1598_E_col; SRA: SRS19518873
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Pathogen: clinical or host-associated; version 1.0
Attributes
isolateBWH_1598_E_col
collected byBrigham and Women's Hospital
collection date2023
geographic locationUSA:Boston
hostHomo sapiens
host diseaseUrinary tract infection
isolation sourceurine
latitude and longitude
host age41
host descriptionW4888939
BioProject
PRJNA278886
Retrieve all samples from this project

Submission
Brigham and Women's Hospital, Jay Worley; 2023-11-13
Antibiogram
AntibioticResistance phenotypeMeasurement signMeasurementMeasurement unitsLaboratory typing methodLaboratory typing platformVendorLaboratory typing method version or reagentTesting standard
amikacinsusceptible<=2mg/LMICVitekBiomérieux96-Well PlateCLSI
amoxicillin-clavulanic acidsusceptible<=2/1mg/LMICVitekBiomérieux96-Well PlateCLSI
ampicillinresistant>=32mg/LMICVitekBiomérieux96-Well PlateCLSI
cefazolinresistant>=64mg/LMICVitekBiomérieux96-Well PlateCLSI
cefepimesusceptible<=1mg/LMICVitekBiomérieux96-Well PlateCLSI
cefoxitinsusceptible<=4mg/LMICVitekBiomérieux96-Well PlateCLSI
ceftazidimesusceptible<=1mg/LMICVitekBiomérieux96-Well PlateCLSI
ceftriaxoneresistant>=64mg/LMICVitekBiomérieux96-Well PlateCLSI
ciprofloxacinresistant==2mg/LMICVitekBiomérieux96-Well PlateCLSI
ertapenemsusceptible<=0.5mg/LMICVitekBiomérieux96-Well PlateCLSI
gentamicinsusceptible<=1mg/LMICVitekBiomérieux96-Well PlateCLSI
levofloxacinresistant==4mg/LMICVitekBiomérieux96-Well PlateCLSI
meropenemsusceptible<=0.25mg/LMICVitekBiomérieux96-Well PlateCLSI
nitrofurantoinsusceptible<=16mg/LMICVitekBiomérieux96-Well PlateCLSI
piperacillin-tazobactamsusceptible<=4/4mg/LMICVitekBiomérieux96-Well PlateCLSI
tetracyclinesusceptible<=1mg/LMICVitekBiomérieux96-Well PlateCLSI
tobramycinsusceptible<=1mg/LMICVitekBiomérieux96-Well PlateCLSI
trimethoprim-sulfamethoxazoleresistant>=304/16mg/LMICVitekBiomérieux96-Well PlateCLSI
Accession:
SAMN38228870
ID:
38228870

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