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Animal sample from Pseudopipra pipra (White-crowned manakin) for VGP genome, bDixPip1

Identifiers
BioSample: SAMN32739894; Sample name: Animal sample from Pseudopipra pipra (white-crowned manakin) for VGP genome, bDixPip1; SRA: SRS22400393
Organism
Pseudopipra pipra
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Pseudopipra
Package
Model organism or animal; version 1.0
Attributes
isolatebDixPip1
development stageadult
sexfemale
tissuemuscle
biomaterial providerUniversity of Michigan
collected byGleen F. Seeholzer, American Museum of Natural History
collection date2011-05-26
geographic locationPeru
latitude and longitude10.38 S 73.8 W
storage conditionsliquid nitrogen
treatmentfrozen, specimen prep uses cornmeal
Description

The white-crowned manakin (Pseudopipra pipra) is a small suboscine passerine bird in the manakin family Pipridae. Like other manakins, this species has a fascinating breeding display at a communal lek, with 3-4 males just within earshot of each other. Males fly between horizontal perches with a swooping flight, or, when a female is present, a slow butterfly-like flutter (from Wikipedia entry). This sample from a female caught in Peru by Gleen F. Seeholzer at the American Museum of Natural History, and later coordinated by Jacob Berv at the University of Michigan, was used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.

BioProjects
PRJNA1098008 Pseudopipra pipra isolate:bDixPip1
Retrieve all samples from this project

PRJNA1057371 Pseudopipra pipra isolate:bDixPip1
Retrieve all samples from this project

PRJNA1057370 Pseudopipra pipra isolate:bDixPip1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2023-01-14
Accession:
SAMN32739894
ID:
32739894

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