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Uncultivated Empedobacter brevis UBA2312 genome recovered from SRX823025

Identifiers
BioSample: SAMN06457731; Sample name: Empedobacter brevis UBA2312; SRA: SRS2034576
Organism
Empedobacter brevis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Empedobacter
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA2312
isolation sourcewood
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX823025 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated70.97%
contamination_estimated0.00%
environmental_sampletrue
genome_coverage122.33
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749642.
Description

Uncultivated genome recovered from an assembly of the SRX823025 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457731
ID:
6457731

BioProject SRA Nucleotide

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