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Uncultivated Alicycliphilus sp. UBA880 genome recovered from SRX822549

Identifiers
BioSample: SAMN06457645; Sample name: Alicycliphilus sp. UBA880; SRA: SRS2039005
Organism
Alicycliphilus sp. UBA880
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus; unclassified Alicycliphilus
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA880
isolation sourcewood
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822549 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated82.33%
contamination_estimated0.84%
environmental_sampletrue
genome_coverage11.32
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749166.
Description

Uncultivated genome recovered from an assembly of the SRX822549 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457645
ID:
6457645

BioProject SRA Nucleotide

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