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Uncultivated Stenotrophomonas maltophilia UBA5032 genome recovered from SRX823254

Identifiers
BioSample: SAMN06457498; Sample name: Stenotrophomonas maltophilia UBA5032; SRA: SRS2034766
Organism
Stenotrophomonas maltophilia
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas maltophilia group
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA5032
isolation sourcewood
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX823254 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated88.95%
contamination_estimated0.38%
environmental_sampletrue
genome_coverage15.84
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749871.
Description

Uncultivated genome recovered from an assembly of the SRX823254 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457498
ID:
6457498

BioProject SRA Nucleotide

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