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Uncultivated Pantoea sp. UBA2523 genome recovered from SRX822574

Identifiers
BioSample: SAMN06457328; Sample name: Pantoea sp. UBA2523; SRA: SRS2039022
Organism
Pantoea sp. UBA2523
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; unclassified Pantoea
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA2523
isolation sourcewood
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822574 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated91.54%
contamination_estimated0.14%
environmental_sampletrue
genome_coverage15.05
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749191.
Description

Uncultivated genome recovered from an assembly of the SRX822574 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457328
ID:
6457328

BioProject SRA Nucleotide

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