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Uncultivated Pedobacter sp. UBA2067 genome recovered from SRX822395

Identifiers
BioSample: SAMN06457242; Sample name: Pedobacter sp. UBA2067; SRA: SRS2038835
Organism
Pedobacter sp. UBA2067
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter; unclassified Pedobacter
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA2067
isolation sourcemetal
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822395 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated89.77%
contamination_estimated1.20%
environmental_sampletrue
genome_coverage7.47
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749012.
Description

Uncultivated genome recovered from an assembly of the SRX822395 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457242
ID:
6457242

BioProject SRA Nucleotide

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