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Uncultivated Atopobium sp. UBA2729 genome recovered from SRX331739

Identifiers
BioSample: SAMN06457130; Sample name: Atopobium sp. UBA2729; SRA: SRS2033569
Organism
Atopobium sp. UBA2729
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium; unclassified Atopobium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA: Wyoming
isolateUBA2729
isolation sourceRumen fluid
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX331739 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated77.73%
contamination_estimated2.42%
environmental_sampletrue
genome_coverage38.84
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR948123.
Description

Uncultivated genome recovered from an assembly of the SRX331739 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457130
ID:
6457130

BioProject SRA Nucleotide

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