U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Gammaproteobacteria bacterium UBA1979 genome recovered from ERX555916

Identifiers
BioSample: SAMN06456321; Sample name: Gammaproteobacteria bacterium UBA1979; SRA: SRS2031126
Organism
Gammaproteobacteria bacterium UBA1979
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; unclassified Gammaproteobacteria
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA1979
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX555916 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated79.96%
contamination_estimated1.22%
environmental_sampletrue
genome_coverage27.46
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR599163.
Description

Uncultivated genome recovered from an assembly of the ERX555916 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06456321
ID:
6456321

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center