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Uncultivated Candidatus Pelagibacter sp. UBA2154 genome recovered from ERX556027

Identifiers
BioSample: SAMN06455852; Sample name: Candidatus Pelagibacter sp. UBA2154; SRA: SRS2031411
Organism
Candidatus Pelagibacter sp. UBA2154
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; Candidatus Pelagibacter; unclassified Candidatus Pelagibacter
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA2154
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX556027 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated76.11%
contamination_estimated2.41%
environmental_sampletrue
genome_coverage224.22
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR599062.
Description

Uncultivated genome recovered from an assembly of the ERX556027 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455852
ID:
6455852

BioProject SRA Nucleotide

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