U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Sphingobium yanoikuyae UBA4196 genome recovered from SRX703649

Identifiers
BioSample: SAMN06455643; Sample name: Sphingobium yanoikuyae UBA4196; SRA: SRS2036125
Organism
Sphingobium yanoikuyae
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationSpain: Alfacada pond, Ebro delta, Tarragona
isolateUBA4196
isolation sourceepidermal mucus of Anguilla anguilla fishes in Ebro delta
metagenome sourcefish metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX703649 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated95.49%
contamination_estimated1.60%
environmental_sampletrue
genome_coverage41.87
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the fish metagenome reads: SRR1578068.
Description

Uncultivated genome recovered from an assembly of the SRX703649 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455643
ID:
6455643

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center