U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Flavobacteriaceae bacterium UBA3078 genome recovered from SRX559946

Identifiers
BioSample: SAMN06455127; Sample name: Flavobacteriaceae bacterium UBA3078; SRA: SRS2034330
Organism
Flavobacteriaceae bacterium UBA3078
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; unclassified Flavobacteriaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA: Coal Oil Point, Santa Barbara, California
isolateUBA3078
isolation sourceOil polluted marine water
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX559946 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated84.35%
contamination_estimated3.66%
environmental_sampletrue
genome_coverage49.72
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: SRR1313318.
Description

Uncultivated genome recovered from an assembly of the SRX559946 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455127
ID:
6455127

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center