U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Alphaproteobacteria bacterium UBA3203 genome recovered from ERX556315

Identifiers
BioSample: SAMN06454824; Sample name: Alphaproteobacteria bacterium UBA3203; SRA: SRS2031674
Organism
Alphaproteobacteria bacterium UBA3203
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA3203
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX556315 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated93.70%
contamination_estimated0.87%
environmental_sampletrue
genome_coverage15.31
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR599374.
Description

Uncultivated genome recovered from an assembly of the ERX556315 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454824
ID:
6454824

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center