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Uncultivated Treponema sp. UBA4873 genome recovered from SRX691270

Identifiers
BioSample: SAMN06454298; Sample name: Treponema sp. UBA4873; SRA: SRS2035756
Organism
Treponema sp. UBA4873
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; unclassified Treponema
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationChina: Luzhou
isolateUBA4873
isolation sourcemud
metagenome sourcefermentation metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX691270 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated97.90%
contamination_estimated2.10%
environmental_sampletrue
genome_coverage195.22
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR1561995.
Description

Uncultivated genome recovered from an assembly of the SRX691270 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454298
ID:
6454298

BioProject SRA Nucleotide

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