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Uncultivated Sphingomonas sp. UBA4815 genome recovered from SRX559915

Identifiers
BioSample: SAMN06454098; Sample name: Sphingomonas sp. UBA4815; SRA: SRS2034282
Organism
Sphingomonas sp. UBA4815
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; unclassified Sphingomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationCanada: North Alberta
isolateUBA4815
isolation sourceSuncor tailing pond sample
metagenome sourcehydrocarbon metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX559915 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.09%
contamination_estimated3.61%
environmental_sampletrue
genome_coverage18.5
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the hydrocarbon metagenome reads: SRR1313281,SRR1313282,SRR1313285,SRR1313283,SRR1313287,SRR1313284.
Description

Uncultivated genome recovered from an assembly of the SRX559915 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454098
ID:
6454098

BioProject SRA Nucleotide

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