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Uncultivated Sphingobacterium sp. UBA5144 genome recovered from SRX822330

Identifiers
BioSample: SAMN06454083; Sample name: Sphingobacterium sp. UBA5144; SRA: SRS2038758
Organism
Sphingobacterium sp. UBA5144
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium; unclassified Sphingobacterium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA5144
isolation sourceplastic
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822330 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated94.92%
contamination_estimated1.43%
environmental_sampletrue
genome_coverage13.8
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1748947.
Description

Uncultivated genome recovered from an assembly of the SRX822330 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06454083
ID:
6454083

BioProject SRA Nucleotide

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