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Uncultivated Sphingobacterium sp. UBA5980 genome recovered from SRX822271

Identifiers
BioSample: SAMN06453564; Sample name: Sphingobacterium sp. UBA5980; SRA: SRS2038694
Organism
Sphingobacterium sp. UBA5980
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium; unclassified Sphingobacterium
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA5980
isolation sourcemetal
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822271 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated99.52%
contamination_estimated2.38%
environmental_sampletrue
genome_coverage62.58
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1748888.
Description

Uncultivated genome recovered from an assembly of the SRX822271 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453564
ID:
6453564

BioProject SRA Nucleotide

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