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Uncultivated Helicobacter typhlonius UBA3405 genome recovered from ERX166941

Identifiers
BioSample: SAMN06453229; Sample name: Helicobacter typhlonius UBA3405; SRA: SRS2030419
Organism
Helicobacter typhlonius
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA3405
isolation sourcedigestive tract (UBERON:0001555); intestine (UBERON:0000160)
metagenome sourcemouse gut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX166941 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.93%
contamination_estimated2.52%
environmental_sampletrue
genome_coverage13.73
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: ERR192252.
Description

Uncultivated genome recovered from an assembly of the ERX166941 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453229
ID:
6453229

BioProject SRA Nucleotide

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