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Uncultivated Treponema sp. UBA3683 genome recovered from SRX290711

Identifiers
BioSample: SAMN06452956; Sample name: Treponema sp. UBA3683; SRA: SRS2032988
Organism
Treponema sp. UBA3683
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; unclassified Treponema
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationNULL
isolateUBA3683
isolation sourcelow methane producing sheep
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX290711 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated90.21%
contamination_estimated1.40%
environmental_sampletrue
genome_coverage73.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR873601.
Description

Uncultivated genome recovered from an assembly of the SRX290711 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06452956
ID:
6452956

BioProject SRA Nucleotide

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