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Uncultivated Sphingomonas sanguinis UBA3959 genome recovered from SRX869326

Identifiers
BioSample: SAMN06452268; Sample name: Sphingomonas sanguinis UBA3959; SRA: SRS2035510
Organism
Sphingomonas sanguinis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationPacific Ocean
isolateUBA3959
isolation sourcerock
metagenome sourcesubsurface metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX869326 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated94.36%
contamination_estimated3.34%
environmental_sampletrue
genome_coverage68.93
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the subsurface metagenome reads: SRR1793930.
Description

Uncultivated genome recovered from an assembly of the SRX869326 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06452268
ID:
6452268

BioProject SRA Nucleotide

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