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Uncultivated Pantoea septica UBA1650 genome recovered from SRX822093

Identifiers
BioSample: SAMN06451778; Sample name: Pantoea septica UBA1650; SRA: SRS2038496
Organism
Pantoea septica
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA1650
isolation sourcemetal/plastic
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822093 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.13%
contamination_estimated0.66%
environmental_sampletrue
genome_coverage55.34
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1748663.
Description

Uncultivated genome recovered from an assembly of the SRX822093 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451778
ID:
6451778

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