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Uncultivated Methylococcaceae bacterium UBA2778 genome recovered from SRX560108

Identifiers
BioSample: SAMN06451510; Sample name: Methylococcaceae bacterium UBA2778; SRA: SRS2034355
Organism
Methylococcaceae bacterium UBA2778
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; unclassified Methylococcaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA: Coal Oil Point, Santa Barbara, California
isolateUBA2778
isolation sourceOil polluted marine water
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX560108 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated95.52%
contamination_estimated3.60%
environmental_sampletrue
genome_coverage22.59
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: SRR1313734.
Description

Uncultivated genome recovered from an assembly of the SRX560108 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451510
ID:
6451510

BioProject SRA Nucleotide

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