Pasteurella multocida from Control Animal 220 on D... - BioSample

Pasteurella multocida from Control Animal 220 on Day 0

Identifiers: BioSample: SAMN04622938; Sample name: USDA-ARS-USMARC-60380; SRA: SRS3693232

Organism: Pasteurella multocida
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella

Package: Pathogen: environmental/food/other; version 1.0

Attributes

strain	USDA-ARS-USMARC-60380
collection date	2013-09-24
broad-scale environmental context	livestock-associated habitat
local-scale environmental context	feedlot
environmental medium	mucus
geographic location	USA:Tennessee
host	Bos taurus
isolation and growth condition	missing
latitude and longitude	missing
number of replicons	1
reference for biomaterial	missing
chemical administration	macrolide antibiotic
estimated size	2250000
health state	alive
host age	5-7 months
host body habitat	nasopharynx
host life stage	calf
host subject id	220
host taxonomy ID	9913 (9913)
host tissue sampled	nasopharynx
miscellaneous parameter	control animal, no bovine respiratory disease sign for duration of 29 day experiment
perturbation	calf trailer transport from from USA:TN to USA:KS occurring between day 0 and day 1, macrolide antibiotic administered day 1
sample collection device or method	nasopharyngeal swab
sample material processing	Swab samples from each nares were placed in 1 ml Amies transport medium, held at 4 C, and combined in lab to 2 ml. 50 microliter of suspension was spiral plated on chocolate agar with bacitracin for isolate recovery within 36 hours of sample collection
sample size	2 ml
sample storage temperature	-80 C
source material identifiers	13322
collected by	missing
isolation source	missing

BioProject: PRJNA281531
Retrieve all samples from this project

Submission: USDA-ARS-USMARC, Gregory Harhay; 2016-04-07

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
ampicillin	not defined	<=	0.25	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
ceftiofur	susceptible	<=	0.25	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
chlortetracycline	susceptible	<=	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
clindamycin	not defined	>	16	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
danofloxacin	susceptible	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
enrofloxacin	susceptible	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
florfenicol	susceptible	==	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
gentamicin	not defined	==	2	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
neomycin	not defined	==	8	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
oxytetracycline	susceptible	<=	0.5	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
penicillin	susceptible	<=	0.12	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
spectinomycin	susceptible	==	16	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
sulfadimethoxine	not defined	>	256	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tiamulin	not defined	==	16	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tilmicosin	not defined	<=	4	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	2/32	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tulathromycin	susceptible	<=	1	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI
tylosin	not defined	==	16	mg/L	MIC	Sensititre	TREK Diagnostic Systems	Plate: BOPO6F; Host: Cattle; Body Site: Respiratory	CLSI

Accession:: SAMN04622938
ID:: 4622938

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Pasteurella multocida from Control Animal 220 on Day 0

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