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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN04339722; Sample name: 0000-0055-3678; SRA: SRS1224049

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate	140
collected by	Brigham and Women's Hospital
collection date	2015
geographic location	USA:Boston
host	Homo sapiens
host disease	Missing
isolation source	induced sputum
latitude and longitude	Missing
host age	77
host sex	male
host subject id	Ecoli-51

BioProject: PRJNA278886
Retrieve all samples from this project

Submission: Brigham & Women's Hospital, Xiaomin Zhao; 2015-12-16

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	susceptible	<=	2	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
amoxicillin-clavulanic acid	susceptible	==	4/2	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ampicillin	resistant	>=	32	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefepime	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
cefoxitin	intermediate	==	8	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftazidime	susceptible	<=	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ceftriaxone	resistant	==	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ciprofloxacin	resistant	>=	64	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
ertapenem	resistant	>=	4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
gentamicin	susceptible	<=	0.5	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
levofloxacin	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
nitrofurantoin	resistant	>=	8	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
piperacillin-tazobactam	intermediate	==	32/4	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tobramycin	intermediate	==	8	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
tetracycline	resistant	>=	16	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
trimethoprim-sulfamethoxazole	resistant	>=	16/304	mg/L	MIC	Vitek	Biomérieux	missing	CLSI
meropenem	susceptible	<=	0.25	mg/L	MIC	Vitek	Biomérieux	missing	CLSI

Accession:: SAMN04339722
ID:: 4339722

BioProject SRA Nucleotide

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