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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7852911; SRA: ERS5599391
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameSRR5580336-bin.15
ENA first public2021-01-25
ENA last update2021-01-25
ENA-CHECKLISTERC000047
External IdSAMEA7852911
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-25T17:28:44Z
INSDC last update2021-01-25T09:01:14Z
INSDC statuspublic
Submitter IdSRR5580336-bin.15
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score95.56
completeness softwareCheckM v1.0.11
contamination score3.63
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSRS1996016
sequencing methodNextSeq 500
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run SRR5580336

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-29
Accession:
SAMEA7852911
ID:
17701894

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