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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7848127; SRA: ERS5595289
Organism
Culturomica massiliensis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Odoribacteraceae; Culturomica
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameSRR413762-bin.9
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7848127
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:03Z
INSDC last update2021-01-21T23:17:50Z
INSDC statuspublic
Submitter IdSRR413762-bin.9
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.12.0
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.89
completeness softwareCheckM v1.0.11
contamination score0.00
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSRS295018
sequencing methodIllumina Genome Analyzer II
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run SRR413762

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7848127
ID:
17604757

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