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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7847907; SRA: ERS5595069
Organism
uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameSRR2912793-bin.3
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7847907
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:03Z
INSDC last update2021-01-21T23:14:16Z
INSDC statuspublic
Submitter IdSRR2912793-bin.3
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades_v3.11.1
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score100
completeness softwareCheckM v1.0.11
contamination score0.81
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSRS1158745
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run SRR2912793

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7847907
ID:
17602994

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