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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7847736; SRA: ERS5594898
Organism
uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameERR414404-bin.10
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7847736
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:02Z
INSDC last update2021-01-21T23:12:28Z
INSDC statuspublic
Submitter IdERR414404-bin.10
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades_v3.11.1
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score87.00
completeness softwareCheckM v1.0.11
contamination score0.85
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS396453
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR414404

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7847736
ID:
17602887

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