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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7847425; SRA: ERS5594588
Organism
Veillonella dispar
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameERR321589-bin.15
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7847425
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:02Z
INSDC last update2021-01-21T23:08:57Z
INSDC statuspublic
Submitter IdERR321589-bin.15
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades_v3.11.1
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score66.55
completeness softwareCheckM v1.0.11
contamination score2.84
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS328940
sequencing methodIllumina Genome Analyzer II
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR321589

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7847425
ID:
17603232

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