U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7847188; SRA: ERS5594352
Organism
uncultured Oscillospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; environmental samples
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationSweden
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameERR260189-bin.16
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7847188
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:03Z
INSDC last update2021-01-21T23:05:25Z
INSDC statuspublic
Submitter IdERR260189-bin.16
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score87.79
completeness softwareCheckM v1.0.11
contamination score0.67
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS235553
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR260189

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7847188
ID:
17603816

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center