U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA7846341; SRA: ERS5593506
Organism
uncultured Dysgonomonas sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Dysgonomonadaceae; Dysgonomonas; environmental samples
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameERR1190731-bin.4
ENA first public2021-01-23
ENA last update2021-01-21
ENA-CHECKLISTERC000047
External IdSAMEA7846341
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-01-23T04:12:03Z
INSDC last update2021-01-21T22:52:10Z
INSDC statuspublic
Submitter IdERR1190731-bin.4
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.10.0
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score100
completeness softwareCheckM v1.0.11
contamination score2.95
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS1015806
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR1190731

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-27
Accession:
SAMEA7846341
ID:
17606005

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center