Australian marsupial phylogenetic study. Bioplatfo... - BioSample

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Result Filters

Organism: Isoodon obesulus affinis
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Peramelemorphia; Peramelidae; Isoodon; Isoodon obesulus

Attributes

geographic location	Australia
identified by	Anna MacDonald
investigation type	phylogenetic study
sample name	53428
sex	not determined
sub species	affinis
tissue	ear epithelium
BPA_library_ID	53428
BPA_sample_ID	40721
CALLABLE	985961
DNA extraction method	salting out
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2021-01-05T04:27:30Z
ENA-LAST-UPDATE	2020-09-25T00:37:48Z
External Id	SAMEA7321147
INSDC center name	AUSTRALIAN NATIONAL UNIVERSITY
INSDC first public	2021-01-05T04:27:30Z
INSDC last update	2020-09-25T00:37:48Z
INSDC status	public
LOW_COVERAGE	124792
NO_COVERAGE	44
ReadLength	100bp
Submitter Id	53428
TCCP_ID	53428_AHGVYGBCX2_TGGCAAT_S90
bioproject_accession	PRJEB39788
class	Mammalia
collection	Wildlife Tissue Collection
common name	Southern brown bandicoot
decimal_latitude	-41.16
decimal_longitude	146.34
depthmean	96.3
depthmedian	31
family	Peramelidae
genus	Isoodon
geographic location (region and locality)	Tasmania
institution_name	University of Canberra
location_text	Coles Beach picnic area, East Don Head, Devonport
order	Peramelemorphia
phylum	Chordata
scientific_name	Isoodon obesulus affinis
sequencing method	Illumina SBS, short PE reads
species	obesulus
state_or_region	Tasmania
tissue_number	UC1247
tissue_preservation	ethanol \| frozen
totalmapped2tgt	0.3301
totalpaired	0.2695
totalreadsstart	4243984
voucher_number	no voucher
voucher_or_tissue_number	UC1247
wild_captive	wild