Australian marsupial phylogenetic study. Bioplatfo... - BioSample

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Result Filters

Organism: Setonix brachyurus (quokka)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Diprotodontia; Macropodidae; Setonix

Attributes

geographic location	Australia
investigation type	phylogenetic study
sample name	40092
sex	not determined
tissue	liver
AtlasLivingAustralia	https://biocache.ala.org.au/occurrences/14e2bdb3-e317-44b5-aa48-3283b7d048a4
BPA_library_ID	52723
BPA_sample_ID	40092
CALLABLE	1442011
DNA extraction method	salting out
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2021-01-05T04:27:28Z
ENA-LAST-UPDATE	2020-09-25T00:33:41Z
External Id	SAMEA7321001
INSDC center name	AUSTRALIAN NATIONAL UNIVERSITY
INSDC first public	2021-01-05T04:27:28Z
INSDC last update	2020-09-25T00:33:41Z
INSDC status	public
LOW_COVERAGE	131458
NO_COVERAGE	1494
ReadLength	100bp
Submitter Id	40092
TCCP_ID	40092_LANES3
bioproject_accession	PRJEB39788
class	Mammalia
collection	Mammal
common name	quokka
depthmean	101.32
depthmedian	40
family	Macropodidae
genus	Setonix
geographic location (region and locality)	Western Australia
institution_name	Australian Biological Tissue Collection, South Australian Museum
location_text	Rottnest Island
order	Diprotodontia
phylum	Chordata
scientific_name	Setonix brachyurus
sequencing method	Illumina SBS, short PE reads
species	brachyurus
state_or_region	Western Australia
tissue_number	ABTC07868
tissue_preservation	frozen
totalmapped2tgt	0.4935
totalpaired	0.3875
totalreadsstart	3848948
voucher_number	no voucher
voucher_or_tissue_number	ABTC07868
wild_captive	wild