Australian marsupial phylogenetic study. Bioplatfo... - BioSample

Australian marsupial phylogenetic study. Bioplatforms Australia and Oz Mammals Genomics.

Organism: Pseudantechinus macdonnellensis (fat-tailed pseudantechinus)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Dasyuromorphia; Dasyuridae; Pseudantechinus

Attributes

geographic location	Australia
investigation type	phylogenetic study
sample name	40078
sex	not determined
tissue	heart \| liver
AtlasLivingAustralia	https://biocache.ala.org.au/occurrences/33cf2765-6f7b-434c-ac5f-d5dfcb2a0b9a
BPA_library_ID	52709
BPA_sample_ID	40078
CALLABLE	1869582
DNA extraction method	salting out
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2021-01-05T04:27:28Z
ENA-LAST-UPDATE	2020-09-25T00:33:15Z
External Id	SAMEA7320987
INSDC center name	AUSTRALIAN NATIONAL UNIVERSITY
INSDC first public	2021-01-05T04:27:28Z
INSDC last update	2020-09-25T00:33:15Z
INSDC status	public
LOW_COVERAGE	146087
NO_COVERAGE	689
ReadLength	100bp
Submitter Id	40078
TCCP_ID	40078_LANES3
bioproject_accession	PRJEB39788
class	Mammalia
collection	Mammal
common name	fat-tailed pseudantechinus
decimal_latitude	-26.5
decimal_longitude	130.44
depthmean	81.05
depthmedian	58
family	Dasyuridae
genus	Pseudantechinus
geographic location (region and locality)	South Australia
institution_name	Australian Biological Tissue Collection, South Australian Museum
location_text	Mount Kintore, 8.4 km NW, site code WA03
order	Dasyuromorphia
phylum	Chordata
scientific_name	Pseudantechinus macdonnellensis
sequencing method	Illumina SBS, short PE reads
species	macdonnellensis
state_or_region	South Australia
tissue_number	ABTC41536
tissue_preservation	frozen
totalmapped2tgt	0.6594
totalpaired	0.5976
totalreadsstart	2815468
voucher_number	SAMA M17694
voucher_or_tissue_number	SAMA M17694
wild_captive	wild

BioProject: PRJEB39788 Australian marsupial phylogeny
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