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Metagenome-Assembled Genome (MAG)

Identifiers
BioSample: SAMEA6784155; SRA: ERS4511838
Organism
Veillonellaceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; unclassified Veillonellaceae
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman gut
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project nameHuman gut MAGs
sample nameMGYG-HGUT-04766
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2021-01-18T04:13:29Z
ENA-LAST-UPDATE2020-04-15T23:25:35Z
External IdSAMEA6784155
INSDC center nameEMG
INSDC first public2021-01-18T04:13:29Z
INSDC last update2020-04-15T23:25:35Z
INSDC statuspublic
Submitter IdMGYG-HGUT-04766
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades_v3.11.1
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEBI-EMG
completeness score64.61
completeness softwareCheckM v1.0.11
contamination score3.05
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromERS1015695
scientific_nameVeillonellaceae bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a MAG from the metagenomic run ERR1190620

BioProject
PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project

Submission
EBI; 2021-01-21
Accession:
SAMEA6784155
ID:
17480403

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